targettrack
Developed by
https://www.epfl.ch/labs/lpbs/data-and-software/User-friendly graphical interface for annotating 3D recordings of C. elegans and tracking neuronal activity
Fluorescence microscopy
Python
GUI
Description
User-friendly graphical interface for annotating 3D recordings of C. elegans and tracking neuronal activity
Date Created
2022-01-18T00:00:00.000Z
Date Updated
2024-01-21T00:00:00.000Z
Feature List
Citation DOI
https://doi.org/10.1038/s41592-023-02096-3
Application Category
Related Images
Executable Instructions
https://github.com/rahi-lab/targettrack/blob/main/Tutorial_Mask.md
Example/Demo data
Name
Software requirements
Processor requirements
Operating systems
Video memory requirements
32 GB
Programming languages
Image modality
Accessible for free
Yes
Producers
Persons and Organizations are temporally plot on the same table. This will be divided in two tables.
Funding
Acknowledgements
We thank N. Greensmith and M. Minder for help developing the coarse volumetric tracking and the GUI, A. Lin for help constructing strains, M. Schmidt and A. Gross for help collecting and analyzing data and O. Peter for early tests of published methods.
Maintainers
